Job Description

We are seeking a Healthcare Data Engineer to architect, develop, and scale pipelines that harmonize and integrate the EHR data across different datasets. In this hands-on role, you will design and maintain high-throughput ETL workflows, apply standards such as HL7 FHIR, OMOP, and SNOMED to guarantee interoperability, and collaborate with bioinformatics, clinical, product, and engineering teams to deliver secure, research-ready data for our expanding disease predicting pipeline.
Key Responsibilities

Data Standardization & Interoperability

• Map heterogeneous data to HL7 FHIR, OMOP, SNOMED CT, ICD-10/11, LOINC, RxNorm, and related vocabularies.
• Maintain high fidelity and minimal data loss through ontology-driven mapping and validation.

Design & Implement ETL Pipelines

• Work with the engineering team to improve the workflows to ingest, de-identify, and harmonize clinical data from various EHR systems.
• Integrate structured and unstructured data (clinical notes, imaging, lab results) into a unified schema.

Cloud Architecture & Scalability

• Work with the engineering team to maintain a secure, cloud-based infrastructure capable of supporting petabyte-scale datasets.
• Leverage distributed computing frameworks (e.g., Apache Spark, Databricks) for high-throughput data processing.

Privacy & Security

• Ensure compliance with HIPAA, GDPR, and other applicable regulations.
• Implement federated data-sharing patterns and robust encryption for data in transit and at rest.

Data Quality & Validation

• Work with the engineering team to build automated anomaly-detection pipelines for real-time data quality checks.

Collaboration & Communication

• Work with cross-functional teams (engineering, product, clinical, lab) to set timelines and roadmaps.
• Share daily progress and surface blockers early while following established best practices in healthcare data engineering.

Skills and Experience

• PhD in CS, Bioinformatics, or a related field; OR5+ years of experience in data engineering with at least 2+ years specific to healthcare or clinical informatics.
• Hands-on knowledge of HL7 FHIR, OMOP, SNOMED CT, and other healthcare data standards.
• Must have experience working with large biobanks (e.g. UKBB, All of Us, ...)
• Proficiency in SQL and one or more programming languages (Python, C+).
• Experience with cloud platforms (AWS, Azure, or GCP) and distributed frameworks (Spark, Databricks).
• Familiarity with privacy-preserving architectures, data encryption, and federated data models.
• Demonstrated success in building ETL pipelines .
• Strong communication skills to translate complex data requirements into actionable plans for cross-functional teams.
• Nice to have: Familiarity with genomic data, and/or NLP for clinical text.

MyOme

Job Tags

Similar Jobs